STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YIPF4Protein YIPF. (242 aa)    
Predicted Functional Partners:
YIPF1
Protein YIPF.
   
 
 0.920
YIPF2
Protein YIPF.
   
 
 0.920
YIF1B
Yip1 interacting factor homolog B, membrane trafficking protein.
   
 
 0.810
TIRAP
TIR domain containing adaptor protein.
      
 0.632
YIF1A
Yip1 interacting factor homolog A, membrane trafficking protein.
   
 
 0.631
TMPPE
Transmembrane protein with metallophosphoesterase domain.
      
 0.551
SLC66A3
Solute carrier family 66 member 3.
      
 0.544
IER3IP1
Immediate early response 3 interacting protein 1.
   
 
 0.502
ARID4A
AT-rich interaction domain 4A.
      
 0.478
OXA1L
OXA1L mitochondrial inner membrane protein.
      
 0.472
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.