STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ifrd1Interferon-related developmental regulator 1. (431 aa)    
Predicted Functional Partners:
W5M2L8_LEPOC
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.951
LOC102696124
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.951
ENSLOCP00000017361
annotation not available
    
  0.951
rps27a
Ribosomal protein S27a.
    
  0.924
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.907
commd1
Copper metabolism (Murr1) domain containing 1.
    
 0.864
COMMD10
COMM domain containing 10.
    
 0.855
ccdc22
Coiled-coil domain containing 22.
    
 0.843
rpl8
Ribosomal protein L8.
    
 
 0.838
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
 
 0.831
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.