STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009766annotation not available (575 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
  0.736
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
 0.676
ENSCHAP00000029214
Recombination activating gene 2.
   
 0.611
babam1
BRISC and BRCA1 A complex member 1.
    
 0.587
ENSCHAP00000030857
annotation not available
    
  0.569
rps27a
Ribosomal protein S27a.
    
  0.546
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.539
rpl8
Ribosomal protein L8.
   
 
 0.522
ENSCHAP00000045129
Ribosomal protein L39.
   
   0.511
ENSCHAP00000037694
annotation not available
   
   0.506
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.