STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000012338annotation not available (76 aa)    
Predicted Functional Partners:
lamc1
Laminin subunit gamma 1.
   
 0.984
ENSCHAP00000060093
annotation not available
   
 0.984
lama1
Laminin subunit alpha 1.
   
 0.972
ENSCHAP00000009036
Laminin, alpha 5.
   
 0.952
lama4
Laminin subunit alpha 4.
   
 0.952
LAMA3
Laminin subunit alpha 3.
   
 0.952
ENSCHAP00000023060
Integrin, beta 4.
   
 0.948
ENSCHAP00000055914
Netrin g1a.
    
 0.942
itgb6
Integrin subunit beta 6.
   
 0.933
ENSCHAP00000019356
Usher syndrome 2A (autosomal recessive, mild).
   
 0.915
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.