STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
armc1Armadillo repeat containing 1. (275 aa)    
Predicted Functional Partners:
mtfr1l
Mitochondrial fission regulator 1 like.
    
 
 0.654
LOC105894309
dnaJ homolog subfamily C member 11-like.
    
 
 0.648
ENSCHAP00000018953
DnaJ (Hsp40) homolog, subfamily C, member 11b.
    
 
 0.575
mrps25
Mitochondrial ribosomal protein S25.
   
    0.561
dmtf1
Cyclin D binding myb like transcription factor 1.
      
 0.539
abitram
Actin binding transcription modulator.
      
 0.538
ARMC6
Armadillo repeat containing 6.
      
 0.524
ENSCHAP00000013592
Armadillo repeat containing 4.
      
 0.522
fam151b
Family with sequence similarity 151 member B.
      
 0.445
ENSCHAP00000010809
Armadillo repeat containing 10.
      
 0.420
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.