STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca7Carbonic anhydrase 7. (263 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.737
ENSCHAP00000041641
annotation not available
  
  
0.655
LOC105910902
Carbonic anhydrase 1-like.
  
  
0.652
ca2
Carbonic anhydrase 2.
  
  
0.650
ENSCHAP00000038950
Ribosome biogenesis regulator 1 homolog.
   
 
 0.647
ENSCHAP00000035961
Peter pan homolog.
   
    0.601
rpl11
Ribosomal protein L11.
    
 
 0.598
ENSCHAP00000011215
Glutamate-rich WD repeat containing 1.
   
  
 0.595
nop2
NOP2 nucleolar protein.
   
   0.560
ENSCHAP00000050145
WD repeat domain 43.
   
    0.558
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.