STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDSUB1WD repeat, sterile alpha motif and U-box domain containing 1. (478 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.998
ENSCHAP00000062802
Tetratricopeptide repeat domain 37.
    
 0.923
ENSCHAP00000026783
SKI2 homolog, superkiller viralicidic activity 2-like.
    
 0.913
ENSCHAP00000034363
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.862
strap
Serine/threonine kinase receptor associated protein.
  
 
 0.815
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.810
ENSCHAP00000012285
Damage-specific DNA binding protein 1.
    
 0.804
ENSCHAP00000008142
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20.
   
 0.793
ENSCHAP00000022856
Excision repair cross-complementation group 6.
   
 0.792
ENSCHAP00000048029
HBS1-like translational GTPase.
    
 0.778
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.