STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srlSarcalumenin. (483 aa)    
Predicted Functional Partners:
ENSCHAP00000022390
annotation not available
     
 0.854
ENSCHAP00000022541
annotation not available
     
 0.854
ENSCHAP00000033892
Rabenosyn, RAB effector.
    
 0.837
myl1
Myosin light chain 1.
   
  
 0.736
hspb3
Heat shock protein family B (small) member 3.
   
   0.731
ENSCHAP00000012208
Adaptor related protein complex 2 subunit alpha 1.
    
 0.639
ENSCHAP00000022794
annotation not available
   
  
 0.606
eif3l
Eukaryotic translation initiation factor 3 subunit L.
    
 
 0.596
ENSCHAP00000021100
annotation not available
    
 
 0.596
ENSCHAP00000030034
Clathrin, light chain B.
    
 0.567
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.