STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22362.1PFAM: UspA; KEGG: sfu:Sfum_0646 UspA domain-containing protein. (135 aa)    
Predicted Functional Partners:
AEH22364.1
Hypothetical protein; KEGG: sat:SYN_00931 integrin-like repeat-containing protein.
 
    0.809
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.753
AEH22361.1
PFAM: Cytochrome c assembly protein; KEGG: gme:Gmet_3232 cytochrome c assembly protein.
       0.753
AEH23615.1
PFAM: Type IV pilus assembly PilZ; KEGG: tye:THEYE_A0814 type IV pilus assembly protein PilZ.
  
     0.712
AEH23156.1
PFAM: UspA; KEGG: tye:THEYE_A1200 universal stress protein, putative.
  
     0.700
AEH23425.1
PFAM: Methyltransferase type 12; KEGG: tye:THEYE_A2047 hypothetical protein.
  
     0.635
AEH22363.1
KEGG: nth:Nther_0671 radical SAM domain protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
  
    0.611
AEH23700.1
KEGG: hth:HTH_0612 hypothetical protein.
  
     0.586
AEH23424.1
KEGG: tye:THEYE_A1972 hypothetical protein.
  
     0.585
AEH22347.1
KEGG: dak:DaAHT2_2214 hypothetical protein.
  
     0.563
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.