STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23094.1Selenium metabolism protein YedF; KEGG: tye:THEYE_A0996 hypothetical protein; TIGRFAM: SirA-related, selenium metabolism; PFAM: SirA-like; Belongs to the sulfur carrier protein TusA family. (201 aa)    
Predicted Functional Partners:
AEH22350.1
Cysteine desulfurase; KEGG: dth:DICTH_0557 aminotransferase, class V superfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase.
   
 
 0.780
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.762
AEH23525.1
PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: tye:THEYE_A1140 2-hydroxyglutaryl-CoA dehydratase, beta subunit-like protein.
 
    0.707
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.614
AEH23323.1
KEGG: tye:THEYE_A1507 hypothetical protein.
 
  
 0.576
AEH22483.1
CoA-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dps:DP2890 NADH oxidase; SMART: Rhodanese-like.
  
  
 0.561
AEH23366.1
TIGRFAM: Translation elongation factor, selenocysteine-specific; Small GTP-binding protein; KEGG: dal:Dalk_1105 selenocysteine-specific translation elongation factor; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor SelB, winged helix, type 3.
 
   
 0.543
AEH23095.1
PFAM: Glycosyl transferase, family 9; KEGG: hth:HTH_1721 glycosyltransferase.
       0.523
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.488
AEH22681.1
PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: dpr:Despr_3284 hypothetical protein.
  
  
 0.400
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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