STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc80Coiled-coil domain-containing protein 80; Promotes cell adhesion and matrix assembly; Belongs to the CCDC80 family. (867 aa)    
Predicted Functional Partners:
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.742
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.742
pyyb
Peptide YYb.
  
     0.480
thbs2b
Thrombospondin 2b.
   
 
 0.464
grpr
Gastrin-releasing peptide receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.463
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.460
rps19
Ribosomal protein S19.
   
 
 0.458
arl6ip1
ADP-ribosylation factor-like 6-interacting protein 1.
   
 
 0.455
rps15a
40S ribosomal protein S15a; Structural component of the ribosome (By similarity). Required for erythropoiesis during embryonic development.
   
 
 0.455
pax9
Paired box 9.
   
  
 0.453
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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