STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
akr7a3Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase). (353 aa)    
Predicted Functional Partners:
iffo2b
Intermediate filament family orphan 2b; Belongs to the intermediate filament family.
   
  
 0.854
mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
      
 0.774
ldlrad4b
Low density lipoprotein receptor class A domain-containing 4b.
      
 0.672
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
   
 
 0.641
aqp7
Aquaporin 7; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.633
nqo1
NAD(P)H dehydrogenase, quinone 1.
  
  
 0.625
nup133
Nuclear pore complex protein Nup133; Involved in poly(A)+ RNA transport (By similarity). Involved in nephrogenesis.
   
 
 0.625
vps13d
Vacuolar protein sorting 13 homolog D.
   
  
 0.618
igsf21b
Immunoglobin superfamily, member 21b.
    
 
 0.614
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 
 0.603
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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