STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgghgProtein-glucosylgalactosylhydroxylysine glucosidase; Catalyzes the hydrolysis of glucose from the disaccharide unit linked to hydroxylysine residues of collagen and collagen-like proteins; Belongs to the glycosyl hydrolase 65 family. (655 aa)    
Predicted Functional Partners:
syndig1l
Synapse differentiation-inducing gene protein 1-like.
      
 0.973
pudp
Pseudouridine 5'-phosphatase.
  
 
 0.967
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
    
 0.917
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.905
dspa
Desmoplakin a.
      
 0.863
yipf6
Protein YIPF6.
  
 0.770
treh
Trehalase.
  
 
 0.762
ifitm1
Novel interferon-induced transmembrane protein.
   
  
 0.744
ifitm5
Interferon-induced transmembrane protein 5.
      
 0.728
zgc:92137
Alpha-amylase.
  
 
 0.609
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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