STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
armc1Armadillo repeat-containing protein 1. (275 aa)    
Predicted Functional Partners:
dmtf1
Cyclin-D-binding Myb-like transcription factor 1; Transcriptional activator which activates the CDKN2A/ARF locus in response to Ras-Raf signaling, thereby promoting p53/TP53- dependent growth arrest. Binds to the consensus sequence 5'- CCCG[GT]ATGT-3'.
      
 0.958
abitram
Protein Abitram; May regulate actin polymerization, filopodia dynamics and arborization of neurons; Belongs to the ABITRAM family.
      
 0.603
upf1
UPF1 RNA helicase and ATPase.
      
 0.588
ARMC6
Armadillo repeat containing 6.
      
 0.562
armc4
Armadillo repeat-containing 4.
      
 0.557
mtfr1l
Mitochondrial fission regulator 1-like; Belongs to the MTFR1 family.
   
 
 0.527
dnajc11a
DnaJ (Hsp40) homolog, subfamily C, member 11a.
    
 
 0.490
fam151b
Family with sequence similarity 151 member B.
   
  
 0.475
dnajc11
DnaJ (Hsp40) homolog, subfamily C, member 11b.
    
 
 0.455
armc10
Armadillo repeat-containing 10.
      
 0.432
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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