STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr2f1bNuclear receptor subfamily 2 group F member 1-B; Putative transcription factor that is required in photoreceptor cells precursors during eye development; Belongs to the nuclear hormone receptor family. NR2 subfamily. (389 aa)    
Predicted Functional Partners:
nitr3r.1l
Novel immune-type receptor 3,-related 1-like.
    
 
 0.746
ttpal
Tocopherol (alpha) transfer protein-like.
 
  
 
 0.746
ccdc85al
Coiled-coil domain-containing 85A,-like.
      
 0.719
LOC562466
Cyclic nucleotide-gated channel subunit beta 3, tandem duplicate 2.
      
 0.620
isl2a
Insulin gene enhancer protein isl-2a; Binds to one of the cis-acting domain of the insulin gene enhancer. May be involved in subtype specialization of primary motoneurons.
   
 
 0.610
F1Q7K3_DANRE
Si:ch73-386h18.1.
   
  
 0.566
hmga1b
High mobility group AT-hook 1b.
    
 
 0.563
ss18l2
Zgc:112097 protein.
      
 0.561
inaa
Internexin neuronal intermediate filament protein, alpha a; Belongs to the intermediate filament family.
    
 
 0.553
rom1a
Retinal outer segment membrane protein 1a.
      
 0.552
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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