STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc36Tetratricopeptide repeat domain 36; Belongs to the TTC36 family (187 aa)    
Predicted Functional Partners:
ttc39c
Tetratricopeptide repeat domain 39C
   
  
 0.943
ttc9c
Tetratricopeptide repeat domain 9C
      
 0.942
ttc4
Tetratricopeptide repeat domain 4
      
 0.941
ttc26
Intraflagellar transport protein 56; Component of the intraflagellar transport (IFT) complex B required for transport of proteins in the motile cilium. Required for transport of specific ciliary cargo proteins related to motility, while it is neither required for IFT complex B assembly or motion nor for cilium assembly; Belongs to the IFT56 family
      
 0.898
hgd
Homogentisate 1,2-dioxygenase
   
  
 0.739
ttc5
Tetratricopeptide repeat domain 5
      
 0.735
ftcd
Formiminotransferase cyclodeaminase
   
    0.677
haao
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family
   
    0.674
glod4
Glyoxalase domain containing 4
      
 0.649
pipox
Pipecolic acid oxidase
   
    0.610
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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