STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan11Tetraspanin. (254 aa)    
Predicted Functional Partners:
pclob
Piccolo presynaptic cytomatrix protein b.
      
 0.863
nrip2
Nuclear receptor-interacting protein 2.
      
 0.834
Bsna
Uncharacterized protein.
      
 0.698
tspan13b
Tetraspanin 13b; Belongs to the tetraspanin (TM4SF) family.
      
 0.678
dyrk4
Dual-specificity tyrosine-(Y)-phosphorylation-regulated kinase 4.
      
 0.647
esyt1a
Extended synaptotagmin-like protein 1a.
   
 
 0.605
fkbp4
Peptidylprolyl isomerase.
      
 0.563
grm3
Novel protein similar to vertebrate glutamate receptor, metabotropic 3 (GRM3).
      
 0.532
itga3a
Integrin, alpha 3a; Belongs to the integrin alpha chain family.
    
 
 0.502
itga3b
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 
 0.502
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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