STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
anks1bAnkyrin repeat and sterile alpha motif domain-containing protein 1B. (1280 aa)    
Predicted Functional Partners:
pde8b
Phosphodiesterase.
      
 0.807
plcl2
Phosphoinositide phospholipase C.
   
 
 0.694
bag4
BCL2-associated athanogene 4.
   
   0.544
srp19
Signal recognition particle 19.
   
    0.534
ptprdb
Protein tyrosine phosphatase receptor type Db.
   
 
 0.509
stxbp1b
Syntaxin-binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.506
kat6b
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 
 0.480
lmo7a
LIM domain 7a.
   
 
 0.478
rad51b
RAD51 paralog B.
    
 
 0.470
PTPRD
Protein tyrosine phosphatase receptor type D.
   
 
 0.469
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.