STRINGSTRING
shox protein (Danio rerio) - STRING interaction network
"shox" - Short stature homeobox in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shoxShort stature homeobox (304 aa)    
Predicted Functional Partners:
sox5
SRY (sex determining region Y)-box 5; SRY-box containing gene 5 (759 aa)
       
 
  0.677
sox6
SRY (sex determining region Y)-box 6; SRY-box containing gene 6 (785 aa)
       
 
  0.582
tbx15
T-box 15 (620 aa)
     
 
  0.574
ENSDARG00000076615
Hyperpolarization activated cyclic nucleotide-gated potassium channel 3 (187 aa)
           
  0.554
prox2
Prospero homeobox 2 (582 aa)
     
   
  0.551
sult4a1
Sulfotransferase family 4A, member 1; Belongs to the sulfotransferase 1 family (284 aa)
       
 
  0.536
hcn4
Hyperpolarization activated cyclic nucleotide-gated potassium channel 4 (1130 aa)
           
  0.512
tbx18
T-box 18 (563 aa)
     
 
  0.505
pdzrn4
PDZ domain containing ring finger 4 (788 aa)
           
  0.505
tbx3a
T-box 3a (689 aa)
     
 
  0.496
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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