STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim35-27Tripartite motif-containing 35-27. (592 aa)    
Predicted Functional Partners:
bmf1
BCL2 modifying factor 1.
   
  
 0.723
tmem101
Transmembrane protein 101.
      
 0.669
stk17b
Serine/threonine kinase 17B (Apoptosis-inducing); Belongs to the protein kinase superfamily.
    
 
 0.648
rbms2a
RNA-binding motif, single stranded-interacting protein 2a.
      
 0.624
suds3
Suppressor of defective silencing 3 homolog (SDS3, S. cerevisiae).
      
 0.624
rps27a
Ribosomal protein S27a.
    
  0.611
UBB
Si:ch211-202a12.4.
    
  0.576
ubc
Ubiquitin C.
    
  0.576
ubb
Ubiquitin B.
    
  0.576
eef1e1
Eukaryotic translation elongation factor 1 epsilon 1.
      
 0.568
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.