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STRINGSTRING
ppiab protein (Danio rerio) - STRING interaction network
"ppiab" - Peptidyl-prolyl cis-trans isomerase in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiabPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (164 aa)    
Predicted Functional Partners:
aifm1
Apoptosis-inducing factor, mitochondrion-associated 1 (750 aa)
     
  0.925
ppp3r1a
Protein phosphatase 3 (formerly 2B), regulatory s1ubunit B, alpha isoform, a (170 aa)
     
 
  0.751
cox6a1
Cytochrome c oxidase subunit VIa polypeptide 1 (108 aa)
     
        0.745
ppp3cca
Protein phosphatase 3, catalytic subunit, gamma isozyme, a (499 aa)
     
 
  0.743
ppp3ccb
Protein phosphatase 3, catalytic subunit, gamma isozyme, b (506 aa)
     
 
  0.743
ENSDARG00000025106
Protein phosphatase 3, catalytic subunit, beta isozyme (468 aa)
     
 
  0.743
ppp3ca
Protein phosphatase 3, catalytic subunit, alpha isozyme (521 aa)
     
 
  0.743
ppp3r1b
Protein phosphatase 3 (formerly 2B), regulatory s1ubunit B, alpha isoform, b (170 aa)
     
 
  0.725
ran
GTP-binding nuclear protein Ran; GTPase involved in nucleocytoplasmic transport, participating both to the import and the export from the nucleus of proteins and RNAs. Switches between a cytoplasmic GDP- and a nuclear GTP-bound state by nucleotide exchange and GTP hydrolysis. Nuclear import receptors such as importin beta bind their substrates only in the absence of GTP-bound RAN and release them upon direct interaction with GTP-bound RAN while export receptors behave in the opposite way. Thereby, RAN controls cargo loading and release by transport receptors in the proper compartment a [...] (215 aa)
     
 
  0.690
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family (143 aa)
   
        0.682
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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