STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc57Leucine-rich repeat-containing protein 57. (238 aa)    
Predicted Functional Partners:
zfyve19
Zinc finger, FYVE domain-containing 19.
   
 
 0.853
dnajc17
DnaJ (Hsp40) homolog, subfamily C, member 17.
   
  
 0.837
serf2
Small EDRK-rich factor 2.
      
 0.834
stard9
StAR-related lipid transfer (START) domain-containing 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.819
ivd
Novel protein similar to human isovaleryl Coenzyme A dehydrogenase (IVD).
      
 0.801
dut
Deoxyuridine triphosphatase.
      
 0.719
ndufaf1
NADH:ubiquinone oxidoreductase complex assembly factor 1.
   
  
 0.700
ckmt1
Creatine kinase, mitochondrial 1; Belongs to the ATP:guanido phosphotransferase family.
   
  
 0.678
ccndbp1
Cyclin-D1-binding protein 1 homolog; May negatively regulate cell cycle progression. Belongs to the CCNDBP1 family.
      
 0.669
sqor
Sulfide quinone oxidoreductase.
      
 0.666
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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