STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspnAsporin. (370 aa)    
Predicted Functional Partners:
LOC562139
Similar to chymotrypsinogen B1; Belongs to the peptidase S1 family.
   
 
 0.814
zgc:112160
Zgc:112160; Belongs to the peptidase S1 family.
   
 
 0.810
ctrb1
Chymotrypsinogen B1; Belongs to the peptidase S1 family.
   
 
 0.753
dpy19l3
Dpy-19-like C-mannosyltransferase 3.
      
 0.669
vwa5b2
Von Willebrand factor A domain-containing 5B2.
      
 0.650
zgc:77287
Zgc:77287.
  
   
 0.621
hapln4
Hyaluronan and proteoglycan link protein 4.
      
 0.583
lrp3
Low density lipoprotein receptor-related protein 3.
    
 
 0.566
CSKMT
Citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial; Protein-lysine methyltransferase that selectively trimethylates citrate synthase (CS) in mitochondria. Seems to conduct trimethylation in a highly distributive manner rather than in a processive manner, and thus introduces a single methly group per binding event.
      
 0.557
ppm1j
Protein phosphatase, Mg2+/Mn2+-dependent, 1J.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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