STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csmd1aCUB and Sushi multiple domains 1a. (264 aa)    
Predicted Functional Partners:
znf804a
Zinc finger protein 804A.
      
 0.834
dpyda.1
Dihydropyrimidine dehydrogenase a, tandem duplicate 1.
      
 0.806
cacna1c
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
 
 0.745
nos1apa-2
Nitric oxide synthase 1 (neuronal) adaptor protein a.
      
 0.722
cnnm2b
Cyclin and CBS domain divalent metal cation transport mediator 2b.
      
 0.670
sbno1
Strawberry notch homolog 1 (Drosophila).
      
 0.665
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.573
ENSDARP00000154574
Si:ch73-217n20.1.
 
      0.571
slc35g2b
Solute carrier family 35 member G2b.
      
 0.565
vrk2
VRK serine/threonine kinase 2.
      
 0.561
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.