STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taf3TAF3 RNA polymerase II, TATA box-binding protein (TBP)-associated facto. (898 aa)    
Predicted Functional Partners:
taf11
TAF11 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.999
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.998
taf12
TAF12 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
    
 0.996
taf7
TAF7 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
    
 0.996
taf2
Transcription initiation factor TFIID subunit 2; Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter (By similarity).
   
 0.996
taf6
TAF6 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
    
 0.995
tbpl2
TATA box-binding protein-like protein 2; TATA box-binding transcription factor (By similarity). Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis. Commits mesoderm to the hematopoietic lineage during hemopoiesis, acting via mespa. Binds to the mespa promoter.
    
 
 0.994
taf13
TATA-box-binding protein-associated factor 13.
    
 0.994
taf1
Transcription initiation factor TFIID subunit.
   
 0.993
taf5
TAF5 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.992
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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