STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdzrn4PDZ domain-containing ring finger 4. (788 aa)    
Predicted Functional Partners:
ctxn1-2
Cortexin 1.
      
 0.775
ctxn1
Uncharacterized protein.
      
 0.775
lrrc1
Leucine-rich repeat-containing 1.
    
 
 0.757
prox2
Prospero homeobox 2.
      
 0.744
sult4a1
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.663
ca7
Carbonic anhydrase VII; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.624
lnx2b
Ligand of numb-protein X-like protein.
    
 
 0.577
lnx2a
Ligand of numb-protein X 2a.
    
 
 0.563
birc6
Baculoviral IAP repeat-containing 6.
   
 
 0.550
gnao1a
Guanine nucleotide-binding protein (G protein), alpha-activating activity polypeptide O, a.
   
  
 0.548
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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