STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssc4Protein TSSC4; Belongs to the TSSC4 family. (306 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA-processing factor 8.
    
 
 0.926
aar2
AAR2-splicing factor.
   
 
 0.909
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.888
cd2bp2
CD2 (cytoplasmic tail)-binding protein 2.
   
 
 0.864
phlda2
Pleckstrin homology-like domain family A member 2; Plays a role in regulating placenta growth. May act via its PH domain that competes with other PH domain-containing proteins, thereby preventing their binding to membrane lipids (By similarity).
      
 0.845
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
    
 
 0.830
eftud2
Elongation factor Tu GTP-binding domain-containing 2.
    
 
 0.805
ecd
Ecdysoneless homolog (Drosophila).
    
 
 0.774
slc22a18
Solute carrier family 22 member 18.
      
 0.753
nap1l4a
Nucleosome assembly protein 1-like 4a; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.751
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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