STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cilpCartilage intermediate layer protein, nucleotide pyrophosphohydrolase. (1171 aa)    
Predicted Functional Partners:
tcf20
Transcription factor 20.
   
  
 0.738
DMWD
Zmp:0000000529.
      
 0.692
col10a1b
Collagen, type X, alpha 1b.
      
 0.586
phip
Pleckstrin homology domain-interacting protein.
      
 0.585
myo18aa
Myosin XVIIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.557
nucks1a
Nuclear casein kinase and cyclin-dependent kinase substrate 1a.
   
  
 0.544
ENSDARP00000109565
Hemicentin 2.
      
 0.544
stxbp4
Syntaxin-binding protein 4.
      
 0.541
ncoa5
Nuclear receptor coactivator 5.
      
 0.540
adprhl1
[Protein ADP-ribosylarginine] hydrolase-like protein 1; Belongs to the ADP-ribosylglycohydrolase family.
   
  
 0.493
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.