STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxcl12bChemokine (C-X-C motif) ligand 12B (Stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family. (97 aa)    
Predicted Functional Partners:
cxcr4a
Chemokine (C-X-C motif) receptor 4a; Belongs to the G-protein coupled receptor 1 family.
   
 0.999
cxcr4b
Chemokine (C-X-C motif), receptor 4b; Belongs to the G-protein coupled receptor 1 family.
   
 0.994
ackr3b
Atypical chemokine receptor 3b; Belongs to the G-protein coupled receptor 1 family.
    
 0.989
ackr3a
Atypical chemokine receptor 3a; Belongs to the G-protein coupled receptor 1 family.
    
 0.989
cxcl11.5
Chemokine (C-X-C motif) ligand 11, duplicate 5.
   
 
 0.923
cxcl8a
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 
 0.916
cxcl12a
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
  
 
0.908
ccl25a
Chemokine (C-C motif) ligand 25a.
    
 
 0.906
cxcl14
Chemokine (C-X-C motif) ligand 14.
  
 
 0.903
cxcl19
Chemokine (C-X-C motif) ligand 19.
    
 
 0.821
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.