STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sertad2bSERTA domain-containing 2b. (361 aa)    
Predicted Functional Partners:
kat5b
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
      
 0.860
lcor
Ligand-dependent nuclear receptor corepressor.
   
  
 0.698
nr4a3
Nuclear receptor subfamily 4, group A, member 3.
   
  
 0.648
mcm6
DNA helicase; Belongs to the MCM family.
   
  
 0.585
tgfbr1a
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily.
   
 
 0.476
si:dkey-34e4.1
Si:dkey-34e4.1.
      
 0.456
nos1apa
Nitric oxide synthase 1 (neuronal) adaptor protein a.
      
 0.456
nos1apb
Nitric oxide synthase 1 (neuronal) adaptor protein b.
      
 0.456
tcf21
Transcription factor 21; Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis.
      
 0.453
hspa5
Immunoglobulin binding protein; Belongs to the heat shock protein 70 family.
      
 0.452
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.