STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zswim5Zinc finger, SWIM-type-containing 5. (1151 aa)    
Predicted Functional Partners:
camk2g1
Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1.
   
  
 0.833
b4galt6
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6.
   
  
 0.746
ca15b
Carbonic anhydrase XVb; Belongs to the alpha-carbonic anhydrase family.
      
 0.670
appbp2
Amyloid beta precursor protein (cytoplasmic tail)-binding protein 2.
   
 
 0.609
cul2
Cullin 2; Belongs to the cullin family.
   
 
 0.591
tgfa
Transforming growth factor, alpha.
      
 0.565
zswim8
Zinc finger, SWIM-type-containing 8.
   
 
0.564
fem1c
Protein fem-1 homolog C; Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit; Belongs to the fem-1 family.
   
 
 0.558
zer1
Zyg-11-related, cell cycle regulator.
     
 0.548
zswim6
Zinc finger, SWIM-type-containing 6.
  
 
 
0.546
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.