STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmub2Transmembrane and ubiquitin-like domain containing 2 (291 aa)    
Predicted Functional Partners:
jade1
Protein Jade-1; Transcriptional coactivator which seems to act by promoting acetylation of nucleosomal histone H4 by kat5. Promotes apoptosis (By similarity)
      
 0.681
pip5k1aa
Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, a
      
 0.681
thsd7a
Thrombospondin, type I, domain containing 7A
    
   0.681
tmem53
Transmembrane protein 53
   
  
 0.667
pdss1
Prenyl (decaprenyl) diphosphate synthase, subunit 1; Belongs to the FPP/GGPP synthase family
      
 0.609
psmd4b
Proteasome (prosome, macropain) 26S subunit, non-ATPase, 4b
      
 0.606
epn1
Epsin 1
      
 0.603
psmd4a
Proteasome (prosome, macropain) 26S subunit, non-ATPase, 4a
      
 0.601
tmem209
Transmembrane protein 209
      
 0.580
FCF1
FCF1 rRNA-processing protein
      
 0.565
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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