STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vat1Synaptic vesicle membrane protein VAT-1 homolog. (484 aa)    
Predicted Functional Partners:
rmdn3
Regulator of microtubule dynamics 3.
   
  
 0.821
rab32b
RAB32b, member RAS oncogene family.
   
  
 0.813
scp2a
Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.752
sh3glb1a
SH3-domain GRB2-like endophilin B1a.
      
 0.742
aifm2
Apoptosis-inducing factor mitochondria-associated 2.
   
  
 0.695
cyb5r1
NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
   
  
 0.653
U3JAJ7_DANRE
Si:dkey-61p9.11.
 
 0.648
tomm22
Translocase of Outer mitochondrial membrane 22 homolog (Yeast).
      
 0.646
sh3glb1b
SH3-domain GRB2-like endophilin B1b.
      
 0.645
cyb5r3
NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
   
  
 0.629
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.