STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
her4.4Hairy-related 4, tandem duplicate 4. (152 aa)    
Predicted Functional Partners:
ENSDARP00000140680
Si:ch211-188p14.2.
      
 0.834
zfp36l1b
Zinc finger protein 36, C3H type-like 1 like.
      
 0.741
nol9
Nucleolar protein 9.
      
 0.555
rnf207b
RING finger protein 207; Plays a role in cardiac repolarization possibly by stabilizing membrane expression of the potassium channel kcnh6a/zerg, or by assisting its synthesis, folding or export from the endoplasmic reticulum, in a heat shock protein-dependent manner.
      
 0.515
grik5
Glutamate receptor, ionotropic, kainate 5.
      
 0.480
F1QRG5_DANRE
Si:dkey-250d21.1.
      
 0.477
tbx5b
T-box transcription factor 5b.
      
 0.471
npas1
Neuronal PAS domain protein 1.
      
 0.453
kmt2d
Lysine (K)-specific methyltransferase 2D.
      
 0.451
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.