STRINGSTRING
her4.4 protein (Danio rerio) - STRING interaction network
"her4.4" - Hairy-related 4.4 in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
her4.4Hairy-related 4.4 (152 aa)    
Predicted Functional Partners:
bhlhe41
Basic helix-loop-helix family, member e41 (421 aa)
     
 
  0.494
her11
Hairy-related 11 (274 aa)
     
 
  0.488
helt
Hey-like transcription factor; Transcriptional repressor which binds preferentially to the canonical E box sequence 5’-CACGCG-3’ (270 aa)
     
 
  0.418
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio, Brachydanio rerio, Brachydanio rerio frankei, Celestichthys, Cyprinidae, Cypriniformes, Cypriniphysi, Cyprinoidea, Cyprinoidei, Cyprinus rerio, D. rerio, Danio, Danio frankei, Danio rerio, Danio rerio frankei, Ostariophysi, Otocephala, Otophysi, leopard danio, zebra danio, zebra fish, zebrafish
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