STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a1aSolute carrier family 25 (mitochondrial carrier; citrate transporter), member 1a; Belongs to the mitochondrial carrier (TC 2.A.29) family (359 aa)    
Predicted Functional Partners:
slc25a46
Solute carrier family 25 member 46; May play a role in mitochondrial dynamics by controlling mitochondrial membrane fission
      
 0.767
cs
Citrate synthase, mitochondrial precursor; Citrate synthase, mitochondrial; Citrate synthase
   
 
 0.734
mrpl40
39S ribosomal protein L40, mitochondrial; Mitochondrial ribosomal protein L40
   
  
 0.728
tango2
Transport and golgi organization 2 homolog (Drosophila)
   
  
 0.715
aclya
ATP-citrate synthase; ATP-citrate synthase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family
   
 
 0.660
d2hgdh
D-2-hydroxyglutarate dehydrogenase, mitochondrial precursor; Catalyzes the oxidation of D-2-hydroxyglutarate to alpha- ketoglutarate
   
  
 0.659
dgcr14
Ess-2-splicing factor homolog; DiGeorge syndrome critical region gene 14
      
 0.640
stard9
StAR-related lipid transfer (START) domain containing 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
      
 0.623
slc35f2
Solute carrier family 35, member F2
   
  
 0.601
slc7a6os
Probable rna polymerase ii nuclear localization protein slc7a6os; Directs RNA polymerase II nuclear import
      
 0.600
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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