STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nexnNexilin (F actin-binding protein). (861 aa)    
Predicted Functional Partners:
ebna1bp2
EBNA1-binding protein 2.
   
 
 0.949
gtpbp4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.941
nifk
MKI67 FHA domain-interacting nucleolar phosphoprotein; Plays an essential role in early embryonic development.
   
 
 0.940
mak16
Protein MAK16 homolog; Plays an essential role in early embryonic development.
   
   0.938
rrp1
Ribosomal RNA-processing 1.
   
 
 0.938
rpf1
Ribosome production factor 1; May be required for ribosome biogenesis.
   
 
 0.935
rrp15
RRP15-like protein; Belongs to the RRP15 family.
   
 
 0.919
bxdc2
Brix domain-containing 2.
   
 
 0.918
rsl1d1
Ribosomal L1 domain-containing 1.
   
 
 0.891
rsl24d1
Probable ribosome biogenesis protein RLP24; Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles (By similarity).
   
 
 0.889
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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