STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgi1bLeucine-rich, glioma inactivated 1b. (543 aa)    
Predicted Functional Partners:
adam11
ADAM metallopeptidase domain 11.
     
 0.702
enkur
Enkurin, TRPC channel-interacting protein.
      
 0.648
ttll9
Tubulin tyrosine ligase-like family, member 9.
   
  
 0.648
styxl1
Serine/threonine/tyrosine-interacting-like 1.
      
 0.644
tpra1
Transmembrane protein adipocyte-associated 1 homolog.
      
 0.644
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.619
mcrs1
Microspherule protein 1.
      
 0.582
ca6
Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.
      
 0.582
adam22
ADAM metallopeptidase domain 22.
     
 0.573
podn
Podocan.
      
 0.567
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.