Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CYTB | ENSDARP00000150161 | ENSDARP00000087881 | ENSDARP00000150161 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | Si:ch211-117c9.2. | 0.501 |
CYTB | LOC100535428 | ENSDARP00000087881 | ENSDARP00000136314 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | NACHT domain-containing protein. | 0.561 |
CYTB | ND4 | ENSDARP00000087881 | ENSDARP00000087878 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). | 0.999 |
CYTB | lyrm4 | ENSDARP00000087881 | ENSDARP00000103510 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | LYR motif-containing protein 4; Required for nuclear and mitochondrial iron-sulfur protein biosynthesis. | 0.863 |
CYTB | lyrm4-2 | ENSDARP00000087881 | ENSDARP00000147532 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | Si:ch211-152c8.4; Belongs to the complex I LYR family. | 0.858 |
CYTB | mre11a | ENSDARP00000087881 | ENSDARP00000139437 | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.677 |
ENSDARP00000150161 | CYTB | ENSDARP00000150161 | ENSDARP00000087881 | Si:ch211-117c9.2. | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | 0.501 |
ENSDARP00000150161 | LOC100535428 | ENSDARP00000150161 | ENSDARP00000136314 | Si:ch211-117c9.2. | NACHT domain-containing protein. | 0.517 |
ENSDARP00000150161 | ND4 | ENSDARP00000150161 | ENSDARP00000087878 | Si:ch211-117c9.2. | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). | 0.590 |
ENSDARP00000150161 | krtcap2 | ENSDARP00000150161 | ENSDARP00000093996 | Si:ch211-117c9.2. | Keratinocyte-associated protein 2. | 0.416 |
ENSDARP00000150161 | lyrm4 | ENSDARP00000150161 | ENSDARP00000103510 | Si:ch211-117c9.2. | LYR motif-containing protein 4; Required for nuclear and mitochondrial iron-sulfur protein biosynthesis. | 0.499 |
ENSDARP00000150161 | lyrm4-2 | ENSDARP00000150161 | ENSDARP00000147532 | Si:ch211-117c9.2. | Si:ch211-152c8.4; Belongs to the complex I LYR family. | 0.499 |
ENSDARP00000150161 | mre11a | ENSDARP00000150161 | ENSDARP00000139437 | Si:ch211-117c9.2. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.494 |
ENSDARP00000150161 | soul4 | ENSDARP00000150161 | ENSDARP00000141664 | Si:ch211-117c9.2. | Heme-binding protein soul4. | 0.501 |
LOC100535428 | CYTB | ENSDARP00000136314 | ENSDARP00000087881 | NACHT domain-containing protein. | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. | 0.561 |
LOC100535428 | ENSDARP00000150161 | ENSDARP00000136314 | ENSDARP00000150161 | NACHT domain-containing protein. | Si:ch211-117c9.2. | 0.517 |
LOC100535428 | ND4 | ENSDARP00000136314 | ENSDARP00000087878 | NACHT domain-containing protein. | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). | 0.996 |
LOC100535428 | lyrm4 | ENSDARP00000136314 | ENSDARP00000103510 | NACHT domain-containing protein. | LYR motif-containing protein 4; Required for nuclear and mitochondrial iron-sulfur protein biosynthesis. | 0.599 |
LOC100535428 | lyrm4-2 | ENSDARP00000136314 | ENSDARP00000147532 | NACHT domain-containing protein. | Si:ch211-152c8.4; Belongs to the complex I LYR family. | 0.599 |
LOC100535428 | soul4 | ENSDARP00000136314 | ENSDARP00000141664 | NACHT domain-containing protein. | Heme-binding protein soul4. | 0.561 |
page 1 of 3