Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
YTHDC2 | cpsf1 | ENSDARP00000132196 | ENSDARP00000130523 | YTH domain containing 2. | Cleavage and polyadenylation-specific factor 1. | 0.897 |
YTHDC2 | cpsf2 | ENSDARP00000132196 | ENSDARP00000156082 | YTH domain containing 2. | Cleavage and polyadenylation specificity factor subunit 2. | 0.922 |
YTHDC2 | cpsf6 | ENSDARP00000132196 | ENSDARP00000076726 | YTH domain containing 2. | Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.851 |
YTHDC2 | cstf1 | ENSDARP00000132196 | ENSDARP00000109556 | YTH domain containing 2. | Cleavage stimulation factor, 3' pre-RNA, subunit 1. | 0.916 |
YTHDC2 | nudt21 | ENSDARP00000132196 | ENSDARP00000017229 | YTH domain containing 2. | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.938 |
YTHDC2 | pcf11 | ENSDARP00000132196 | ENSDARP00000065561 | YTH domain containing 2. | PCF11 cleavage and polyadenylation factor subunit. | 0.706 |
YTHDC2 | srsf7b | ENSDARP00000132196 | ENSDARP00000136981 | YTH domain containing 2. | Serine and arginine-rich-splicing factor 7b. | 0.604 |
YTHDC2 | ythdc1 | ENSDARP00000132196 | ENSDARP00000068161 | YTH domain containing 2. | YTH domain-containing 1. | 0.599 |
cpsf1 | YTHDC2 | ENSDARP00000130523 | ENSDARP00000132196 | Cleavage and polyadenylation-specific factor 1. | YTH domain containing 2. | 0.897 |
cpsf1 | cpsf2 | ENSDARP00000130523 | ENSDARP00000156082 | Cleavage and polyadenylation-specific factor 1. | Cleavage and polyadenylation specificity factor subunit 2. | 0.999 |
cpsf1 | cpsf6 | ENSDARP00000130523 | ENSDARP00000076726 | Cleavage and polyadenylation-specific factor 1. | Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.842 |
cpsf1 | cstf1 | ENSDARP00000130523 | ENSDARP00000109556 | Cleavage and polyadenylation-specific factor 1. | Cleavage stimulation factor, 3' pre-RNA, subunit 1. | 0.940 |
cpsf1 | cstf2 | ENSDARP00000130523 | ENSDARP00000110939 | Cleavage and polyadenylation-specific factor 1. | Cleavage stimulation factor, 3' pre-RNA, subunit 2. | 0.991 |
cpsf1 | nudt21 | ENSDARP00000130523 | ENSDARP00000017229 | Cleavage and polyadenylation-specific factor 1. | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.913 |
cpsf1 | pcf11 | ENSDARP00000130523 | ENSDARP00000065561 | Cleavage and polyadenylation-specific factor 1. | PCF11 cleavage and polyadenylation factor subunit. | 0.993 |
cpsf1 | u2af2b | ENSDARP00000130523 | ENSDARP00000023679 | Cleavage and polyadenylation-specific factor 1. | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | 0.418 |
cpsf1 | ythdc1 | ENSDARP00000130523 | ENSDARP00000068161 | Cleavage and polyadenylation-specific factor 1. | YTH domain-containing 1. | 0.891 |
cpsf2 | YTHDC2 | ENSDARP00000156082 | ENSDARP00000132196 | Cleavage and polyadenylation specificity factor subunit 2. | YTH domain containing 2. | 0.922 |
cpsf2 | cpsf1 | ENSDARP00000156082 | ENSDARP00000130523 | Cleavage and polyadenylation specificity factor subunit 2. | Cleavage and polyadenylation-specific factor 1. | 0.999 |
cpsf2 | cpsf6 | ENSDARP00000156082 | ENSDARP00000076726 | Cleavage and polyadenylation specificity factor subunit 2. | Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.850 |
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