STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfap2aTranscription factor AP-2 alpha. (450 aa)    
Predicted Functional Partners:
foxd3
Forkhead box D3.
   
  
 0.866
sox10
HMG-box transcription factor Sox10.
   
  
 0.864
kctd1
Potassium channel tetramerization domain-containing 1.
   
 0.855
KCTD15
Potassium channel tetramerization domain containing 15.
   
 
 0.771
pax3a
Transcription factor PAX3.
   
 
 0.749
npm1a
Nucleophosmin 1a.
   
  0.733
dlx3b
Homeobox protein Dlx3b; Involved in the development of the inner ear; Belongs to the distal-less homeobox family.
   
  
 0.731
dek
DEK proto-oncogene.
   
 0.730
zic1
ZIC family member 1 (Odd-paired homolog, Drosophila).
   
 
 0.720
kctd15a
BTB/POZ domain-containing protein kctd15-like.
   
 
 0.717
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.