STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capn2lCalpain 2, (m/II) large subunit,-like; Belongs to the peptidase C2 family. (700 aa)    
Predicted Functional Partners:
tln2a
Talin 2a.
    
 0.920
tln1
Talin 1.
    
 0.918
tln2b
Talin 2b.
    
 0.912
bida
BH3-interacting domain death agonist.
     
  0.900
cast
Calpastatin.
   
 
 0.872
zgc:153993
Zgc:153993 protein.
   
 
 0.662
baxa
BCL2-associated X, apoptosis regulator a.
   
 
 0.661
LOC100004321
BCL2-associated X, apoptosis regulator a.
   
 
 0.661
ldlrb
Low density lipoprotein receptor b.
   
  
 0.573
chrna4a
Cholinergic receptor, nicotinic, alpha 4a.
      
 0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.