STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn2Ataxin 2. (1112 aa)    
Predicted Functional Partners:
tardbp
TAR DNA-binding protein.
    
 
 0.945
C13H9orf72
Zgc:100846.
      
 0.903
hnrnpa1b
Heterogeneous nuclear ribonucleoprotein A1b.
    
 
 0.880
fus
FUS RNA-binding protein.
   
 
 0.872
ddx61
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
    
 
 0.865
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.863
lsm12a
Protein LSM12 homolog B; Belongs to the LSM12 family.
   
 
 0.848
setx
Senataxin.
   
  
 0.848
lsm12b
Protein LSM12 homolog A; Belongs to the LSM12 family.
   
 
 0.839
atxn1b
Ataxin 1b.
    
 
 0.836
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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