STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skiv2lSuperkiller viralicidic activity 2 (S. cerevisiae homolog)-like (1249 aa)    
Predicted Functional Partners:
TTC37
Tetratricopeptide repeat domain 37
   
 0.999
wdr61
WD repeat domain 61
   
 0.995
exosc1
Exosome component 1
   
 0.988
hbs1l
HBS1-like translational GTPase; HBS1-like (S. cerevisiae)
   
 0.987
exosc3
Exosome component 3
   
 0.981
exosc6
Exosome complex component MTR3; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events
   
 0.981
exosc5
Exosome component 5
   
 0.981
exosc9
Exosome component 9
   
 0.980
exosc7
Exosome component 7
   
 0.980
dis3
DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; DIS3 mitotic control homolog (S. cerevisiae); Belongs to the RNR ribonuclease family
   
 0.979
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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