STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC561429Synaptotagmin VII (653 aa)    
Predicted Functional Partners:
stx1a
Syntaxin 1A (brain); Belongs to the syntaxin family
   
 
 0.724
snap25a
Synaptosomal-associated protein 25-A; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family
   
 
 0.708
ncs1a
Frequenin homolog b (Drosophila); Neuronal calcium sensor 1b
   
 
 0.691
mrps7
Mitochondrial ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family
      
 0.688
cplx2l
Complexin 2, like
   
 
 0.681
snap25b
Synaptosomal-associated protein 25-B; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family
   
 
 0.674
im:7147678
Si:ch73-70c5.1; EPS8-like 1
      
 0.656
stx4
Placental syntaxin 4A; Syntaxin 4; Belongs to the syntaxin family
    
 
 0.635
LOC563082
Complexin 1
   
 
 0.623
sybl1
Synaptobrevin-like 1; Belongs to the synaptobrevin family
    
 
 0.616
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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