STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDARG00000068030Si:cabz01007802.1; Apolipoprotein L domain containing 1 (470 aa)    
Predicted Functional Partners:
ENSDARG00000087492
Uncharacterized protein
      
 0.688
impad1
Inositol monophosphatase domain containing 1
      
 0.683
fbp1a
Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family
      
 0.607
fbp1b
Fructose-1,6-bisphosphatase 1b; Belongs to the FBPase class 1 family
      
 0.552
slc34a2a
Solute carrier family 34 (sodium phosphate), member 2a
      
 0.546
ywhae1
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1; Belongs to the 14-3-3 family
      
 0.454
sdhb
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
      
 0.431
LOC570012
Extended synaptotagmin-like protein 2a
      
 0.400
PHTF1
Zgc:175264 protein; Putative homeodomain transcription factor 1
      
 0.400
zgc:175096
Zinc finger protein 576, tandem duplicate 2; Zinc finger protein 576
      
 0.400
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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