STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klf9Kruppel-like factor 9 (216 aa)    
Predicted Functional Partners:
spsb3a
splA/ryanodine receptor domain and SOCS box containing 3a
      
 0.557
spsb3b
splA/ryanodine receptor domain and SOCS box containing 3b
      
 0.557
ankrd29
Ankyrin repeat domain 29
    
 
 0.535
ENSDARG00000074924
Uncharacterized protein; Nuclear receptor coactivator 7
   
  
 0.520
LOC792958
Uncharacterized protein; Nuclear receptor coactivator 7
   
  
 0.520
klhl38a
Kelch-like 38a (Drosophila)
    
 
 0.516
calcoco1a
Calcium-binding and coiled-coil domain-containing protein 1; May function as a coactivator for aryl hydrocarbon and nuclear receptors
      
 0.504
zgc:92590
Zgc:92590; Belongs to the peptidase S1 family
    
 
 0.503
ky
Kyphoscoliosis peptidase
    
 
 0.502
C2CD4A
C2 calcium-dependent domain containing 4A
      
 0.499
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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