STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skor1aSKI family transcriptional corepressor 1a (751 aa)    
Predicted Functional Partners:
btbd9
BTB (POZ) domain containing 9
      
 0.817
lbx1b
Ladybird homeobox 1b
   
 
 0.776
lbx1a
Novel protein similar to zebrafish lady bird-like homeobox 1 Drosophila homolog (Lbx1h); Ladybird homeobox 1a
   
 
 0.776
map2k5
Mitogen-activated protein kinase kinase 5
      
 0.776
LOC564395
Mothers against decapentaplegic homolog; SMAD family member 6b
    
 
 0.726
smad6a
Mothers against decapentaplegic homolog; SMAD family member 6a
    
 
 0.726
tox3
TOX high mobility group box family member 3
      
 0.677
smad2
Mothers against decapentaplegic homolog 2; Promotes differentiation of dorsal tissues. May be involved in the mediation of Ndr2 signaling during mesoderm and axis formation during embryogenesis
    
 
 0.671
pias1
Protein inhibitor of activated STAT, 1
      
 0.659
pias1b
Protein inhibitor of activated STAT, 1b
      
 0.659
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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