STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serpinf1Zgc:92072; Belongs to the serpin family. (406 aa)    
Predicted Functional Partners:
lrp5
Low density lipoprotein receptor-related protein 5.
    
 0.928
lrp6
Low density lipoprotein receptor-related protein 6.
    
 0.902
ifitm5
Interferon-induced transmembrane protein 5.
   
 
 0.883
fkbp10b
Peptidylprolyl isomerase.
   
 
 0.869
p3h1
Prolyl 3-hydroxylase 1.
      
 0.864
crtap
Cartilage-associated protein.
      
 0.860
tmem38b
Trimeric intracellular cation channel type B; Monovalent cation channel required for maintenance of rapid intracellular calcium release. May act as a potassium counter-ion channel that functions in synchronization with calcium release from intracellular stores.
      
 0.860
mbtps2
Membrane-bound transcription factor peptidase, site 2.
     
 0.744
creb3l1
cAMP-responsive element-binding protein 3-like 1.
      
 0.742
plod2
Procollagen lysine 2-oxoglutarate 5-dioxygenase 2b isoform.
   
  
 0.737
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.