STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F1QEW2_DANRESi:dkey-183i3.5; Belongs to the intermediate filament family. (589 aa)    
Predicted Functional Partners:
cbln11
Cerebellin 11.
    
 
 0.752
tmem176l.4
Transmembrane protein 176l.4.
   
 
 0.751
X1WG46_DANRE
Si:dkey-239b22.1.
   
 
 0.744
ENSDARP00000131071
Si:dkey-247k7.2.
   
  
 0.743
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain-containing.
      
 0.736
ENSDARP00000142441
Si:ch211-183d5.2.
      
 0.736
F1QWR2_DANRE
Si:ch211-153b23.4.
      
 0.692
krt222
Keratin 222; Belongs to the intermediate filament family.
      
 0.670
ENSDARP00000142832
Si:ch211-15b10.6.
      
 0.664
phyhd1
Phytanoyl-CoA dioxygenase domain-containing protein 1; Has alpha-ketoglutarate-dependent dioxygenase activity. Does not show detectable activity towards fatty acid CoA thioesters. Is not expected to be active with phytanoyl CoA (By similarity). Belongs to the PhyH family. PHYHD1 subfamily.
   
  
 0.660
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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