STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCNV1Si:dkey-201i6.2; Potassium channel, subfamily V, member 1; Belongs to the potassium channel family (500 aa)    
Predicted Functional Partners:
zgc:171453
Potassium voltage-gated channel, shaker-related subfamily, beta member 2
  
 0.937
kcnab2a
Potassium voltage-gated channel, shaker-related subfamily, beta member 2
  
 0.937
kcnab1
Potassium voltage-gated channel, shaker-related subfamily, beta member 1
  
 0.937
kcnab1b
Potassium voltage-gated channel, shaker-related subfamily, beta member 1
   
  0.918
kcnk3
Potassium channel, subfamily K, member 3; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family
   
  
 0.784
chrna6
Cholinergic receptor, nicotinic, alpha 6
      
 0.700
grik1a
Glutamate receptor, ionotropic, kainate 1a
   
  
 0.687
chrna3
Cholinergic receptor, nicotinic, alpha 3
      
 0.681
aldh7a1
Aldehyde dehydrogenase 7 family, member A1; Belongs to the aldehyde dehydrogenase family
      
 0.677
gfra2a
GDNF family receptor alpha 2a; Glial cell line derived neurotrophic factor family receptor alpha 2a
   
  
 0.666
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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